package bistro

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package bistro
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type index = [ `bowtie_index ] Bistro.Std.directory
val bowtie_build : ?packed:bool -> ?color:bool -> Defs.fasta Bistro.Std.workflow -> index Bistro.Std.workflow
val bowtie : ?l:int -> ?e:int -> ?m:int -> ?fastq_format:'a Fastq.format -> ?n:int -> ?v:int -> ?maxins:int -> index Bistro.Std.workflow -> [ `single_end of 'a Defs.fastq Bistro.Std.workflow list | `paired_end of 'a Defs.fastq Bistro.Std.workflow list * 'a Defs.fastq Bistro.Std.workflow list ] -> Defs.sam Bistro.Std.workflow