package bistro

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package bistro
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val pileup : ?extsize:int -> ?both_direction:bool -> Defs.bam Bistro.Std.workflow -> Ucsc_gb.bedGraph Bistro.Std.workflow
type gsize = [
  1. | `hs
  2. | `mm
  3. | `ce
  4. | `dm
  5. | `gsize of int
]
type keep_dup = [
  1. | `all
  2. | `auto
  3. | `int of int
]
type _ format
val sam : Defs.sam format
val bam : Defs.bam format
val callpeak : ?pvalue:float -> ?qvalue:float -> ?gsize:gsize -> ?call_summits:bool -> ?fix_bimodal:bool -> ?mfold:(int * int) -> ?extsize:int -> ?nomodel:bool -> ?bdg:bool -> ?control:'a Bistro.Std.workflow list -> ?keep_dup:keep_dup -> 'a format -> 'a Bistro.Std.workflow list -> [ `macs2_callpeak_output ] Bistro.Std.directory Bistro.Std.workflow
class type peaks_xls = object ... end
val peaks_xls : ([ `macs2_callpeak_output ], peaks_xls) Bistro.Std.selector
class type narrow_peaks = object ... end
val narrow_peaks : ([ `macs2_callpeak_output ], narrow_peaks) Bistro.Std.selector
class type peak_summits = object ... end
val peak_summits : ([ `macs2_callpeak_output ], peak_summits) Bistro.Std.selector
val callpeak_broad : ?pvalue:float -> ?qvalue:float -> ?gsize:gsize -> ?call_summits:bool -> ?fix_bimodal:bool -> ?mfold:(int * int) -> ?extsize:int -> ?nomodel:bool -> ?bdg:bool -> ?control:'a Bistro.Std.workflow list -> ?keep_dup:keep_dup -> 'a format -> 'a Bistro.Std.workflow list -> [ `macs2_callpeak_broad_output ] Bistro.Std.directory Bistro.Std.workflow
class type broad_peaks = object ... end
val broad_peaks : ([ `macs2_callpeak_broad_output ], broad_peaks) Bistro.Std.selector