package bistro

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package bistro
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val tophat1 : ?color:bool -> Bowtie.index Bistro.Std.workflow -> [ `single_end of 'a Defs.fastq Bistro.Std.workflow list | `paired_end of 'a Defs.fastq Bistro.Std.workflow list * 'a Defs.fastq Bistro.Std.workflow list ] -> [ `tophat_output ] Bistro.Std.directory Bistro.Std.workflow
val tophat2 : Bowtie2.index Bistro.Std.workflow -> [ `single_end of 'a Defs.fastq Bistro.Std.workflow list | `paired_end of 'a Defs.fastq Bistro.Std.workflow list * 'a Defs.fastq Bistro.Std.workflow list ] -> [ `tophat_output ] Bistro.Std.directory Bistro.Std.workflow
val accepted_hits : ([ `tophat_output ], Defs.bam) Bistro.Std.selector
val junctions : ([ `tophat_output ], Defs.bed6) Bistro.Std.selector