bistro
A library to build and run distributed scientific workflows
Description
bistro is an OCaml library to build and run computations represented by a collection of interdependent scripts, as is often found in data analysis (especially computational biology).
Features:
- build complex and composable workflows declaratively
- simple and lightweight wrapping of new components
- resume-on-failure: if something fails, fix it and the workflow will restart from where it stopped
- parallel workflow execution
- development-friendly: when a script is modified, bistro automatically finds out what needs to be recomputed
- automatic naming of generated files
- static typing: detect file format errors at compile time!
The library provides a datatype to represent scripts (including metadata and dependencies), an engine to run workflows and a standard library providing components for popular tools (although mostly related to computational biology and unix for now).
Install
copied = false, 2000)"
:class="{ 'border-gray-700': !copied, 'text-gray-100': !copied, 'focus:ring-orange-500': !copied, 'focus:border-orange-500': !copied, 'border-green-600': copied, 'text-green-600': copied, 'focus:ring-green-500': copied, 'focus:border-green-500': copied }">
- Published
- 21 Aug 2019
- Authors
- Maintainers
Sources
v0.5.0.tar.gz
md5=0ccb7c97728c94d17494b150192f6162
sha512=61dbd0ee5b98cd5fb8871d653aef0e440c318e9fbca439c3b0e4f86a32fa03c2a8a4770cd96b929b21b378db6788fa7d4df15935370be5b7b227564a31994998
Dependencies
re
>= "1.7.2"
tyxml
>= "4.3"
sexplib
>= "113.24.00" & < "v0.13"
ppx_sexp_conv
< "v0.13"
ppxlib
< "0.23.0"
ocamlgraph
>= "1.8.7"
lwt
>= "3.2.0"
core
>= "v0.12.0" & < "v0.13"
dune
>= "1.11"
base64
>= "3.0.0"
ocaml
>= "4.07.0"
Reverse Dependencies