package phylogenetics

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package phylogenetics
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Library
Module
Module type
Parameter
Class
Class type

Parameters

module A : Alphabet.S_int

Signature

type site =
  1. | Site of (A.t, (A.t * int) option, branch_info) Tree.t
and branch_info = {
  1. original_branch_info : BI.t;
  2. length : float;
  3. insertions : (A.t, (A.t * int) option, branch_info) Tree.branch list;
}
val site_gillespie_direct : Gsl.Rng.t -> (_, _, BI.t) Tree.t -> root:A.t -> rate_matrix:(BI.t -> A.matrix) -> rates_upon_insertion:(BI.t -> float array) -> lambda:float -> mu:float -> site
val fold_alignment : site -> init:'a -> f:('a -> row:int -> col:int -> A.t -> 'a) -> 'a
val alignment_of_site : (A.t -> char) -> (_, _, _) Tree.t -> site -> string Array.t