bio_io 0.6.0 · OCaml Package

val iter : 
  t ->
  query:((t, Base.string) Fieldslib.Field.t -> t -> Base.string -> Base.unit) ->
  target:((t, Base.string) Fieldslib.Field.t -> t -> Base.string -> Base.unit) ->
  pident:((t, Base.float) Fieldslib.Field.t -> t -> Base.float -> Base.unit) ->
  alnlen:((t, Base.int) Fieldslib.Field.t -> t -> Base.int -> Base.unit) ->
  mismatch:((t, Base.int) Fieldslib.Field.t -> t -> Base.int -> Base.unit) ->
  gapopen:((t, Base.int) Fieldslib.Field.t -> t -> Base.int -> Base.unit) ->
  qstart:((t, Base.int) Fieldslib.Field.t -> t -> Base.int -> Base.unit) ->
  qend:((t, Base.int) Fieldslib.Field.t -> t -> Base.int -> Base.unit) ->
  tstart:((t, Base.int) Fieldslib.Field.t -> t -> Base.int -> Base.unit) ->
  tend:((t, Base.int) Fieldslib.Field.t -> t -> Base.int -> Base.unit) ->
  evalue:((t, Base.float) Fieldslib.Field.t -> t -> Base.float -> Base.unit) ->
  bits:((t, Base.float) Fieldslib.Field.t -> t -> Base.float -> Base.unit) ->
  qlen:
    ((t, Base.int Base.option) Fieldslib.Field.t ->
      t ->
      Base.int Base.option ->
      Base.unit) ->
  tlen:
    ((t, Base.int Base.option) Fieldslib.Field.t ->
      t ->
      Base.int Base.option ->
      Base.unit) ->
  Base.unit

val fold : 
  t ->
  init:'acc__0 ->
  query:
    ('acc__0 ->
      (t, Base.string) Fieldslib.Field.t ->
      t ->
      Base.string ->
      'acc__1) ->
  target:
    ('acc__1 ->
      (t, Base.string) Fieldslib.Field.t ->
      t ->
      Base.string ->
      'acc__2) ->
  pident:
    ('acc__2 ->
      (t, Base.float) Fieldslib.Field.t ->
      t ->
      Base.float ->
      'acc__3) ->
  alnlen:
    ('acc__3 -> (t, Base.int) Fieldslib.Field.t -> t -> Base.int -> 'acc__4) ->
  mismatch:
    ('acc__4 -> (t, Base.int) Fieldslib.Field.t -> t -> Base.int -> 'acc__5) ->
  gapopen:
    ('acc__5 -> (t, Base.int) Fieldslib.Field.t -> t -> Base.int -> 'acc__6) ->
  qstart:
    ('acc__6 -> (t, Base.int) Fieldslib.Field.t -> t -> Base.int -> 'acc__7) ->
  qend:('acc__7 -> (t, Base.int) Fieldslib.Field.t -> t -> Base.int -> 'acc__8) ->
  tstart:
    ('acc__8 -> (t, Base.int) Fieldslib.Field.t -> t -> Base.int -> 'acc__9) ->
  tend:
    ('acc__9 -> (t, Base.int) Fieldslib.Field.t -> t -> Base.int -> 'acc__10) ->
  evalue:
    ('acc__10 ->
      (t, Base.float) Fieldslib.Field.t ->
      t ->
      Base.float ->
      'acc__11) ->
  bits:
    ('acc__11 ->
      (t, Base.float) Fieldslib.Field.t ->
      t ->
      Base.float ->
      'acc__12) ->
  qlen:
    ('acc__12 ->
      (t, Base.int Base.option) Fieldslib.Field.t ->
      t ->
      Base.int Base.option ->
      'acc__13) ->
  tlen:
    ('acc__13 ->
      (t, Base.int Base.option) Fieldslib.Field.t ->
      t ->
      Base.int Base.option ->
      'acc__14) ->
  'acc__14

val for_all : 
  t ->
  query:((t, Base.string) Fieldslib.Field.t -> t -> Base.string -> Base.bool) ->
  target:((t, Base.string) Fieldslib.Field.t -> t -> Base.string -> Base.bool) ->
  pident:((t, Base.float) Fieldslib.Field.t -> t -> Base.float -> Base.bool) ->
  alnlen:((t, Base.int) Fieldslib.Field.t -> t -> Base.int -> Base.bool) ->
  mismatch:((t, Base.int) Fieldslib.Field.t -> t -> Base.int -> Base.bool) ->
  gapopen:((t, Base.int) Fieldslib.Field.t -> t -> Base.int -> Base.bool) ->
  qstart:((t, Base.int) Fieldslib.Field.t -> t -> Base.int -> Base.bool) ->
  qend:((t, Base.int) Fieldslib.Field.t -> t -> Base.int -> Base.bool) ->
  tstart:((t, Base.int) Fieldslib.Field.t -> t -> Base.int -> Base.bool) ->
  tend:((t, Base.int) Fieldslib.Field.t -> t -> Base.int -> Base.bool) ->
  evalue:((t, Base.float) Fieldslib.Field.t -> t -> Base.float -> Base.bool) ->
  bits:((t, Base.float) Fieldslib.Field.t -> t -> Base.float -> Base.bool) ->
  qlen:
    ((t, Base.int Base.option) Fieldslib.Field.t ->
      t ->
      Base.int Base.option ->
      Base.bool) ->
  tlen:
    ((t, Base.int Base.option) Fieldslib.Field.t ->
      t ->
      Base.int Base.option ->
      Base.bool) ->
  Base.bool

val exists : 
  t ->
  query:((t, Base.string) Fieldslib.Field.t -> t -> Base.string -> Base.bool) ->
  target:((t, Base.string) Fieldslib.Field.t -> t -> Base.string -> Base.bool) ->
  pident:((t, Base.float) Fieldslib.Field.t -> t -> Base.float -> Base.bool) ->
  alnlen:((t, Base.int) Fieldslib.Field.t -> t -> Base.int -> Base.bool) ->
  mismatch:((t, Base.int) Fieldslib.Field.t -> t -> Base.int -> Base.bool) ->
  gapopen:((t, Base.int) Fieldslib.Field.t -> t -> Base.int -> Base.bool) ->
  qstart:((t, Base.int) Fieldslib.Field.t -> t -> Base.int -> Base.bool) ->
  qend:((t, Base.int) Fieldslib.Field.t -> t -> Base.int -> Base.bool) ->
  tstart:((t, Base.int) Fieldslib.Field.t -> t -> Base.int -> Base.bool) ->
  tend:((t, Base.int) Fieldslib.Field.t -> t -> Base.int -> Base.bool) ->
  evalue:((t, Base.float) Fieldslib.Field.t -> t -> Base.float -> Base.bool) ->
  bits:((t, Base.float) Fieldslib.Field.t -> t -> Base.float -> Base.bool) ->
  qlen:
    ((t, Base.int Base.option) Fieldslib.Field.t ->
      t ->
      Base.int Base.option ->
      Base.bool) ->
  tlen:
    ((t, Base.int Base.option) Fieldslib.Field.t ->
      t ->
      Base.int Base.option ->
      Base.bool) ->
  Base.bool

val to_list : 
  t ->
  query:((t, Base.string) Fieldslib.Field.t -> t -> Base.string -> 'elem__) ->
  target:((t, Base.string) Fieldslib.Field.t -> t -> Base.string -> 'elem__) ->
  pident:((t, Base.float) Fieldslib.Field.t -> t -> Base.float -> 'elem__) ->
  alnlen:((t, Base.int) Fieldslib.Field.t -> t -> Base.int -> 'elem__) ->
  mismatch:((t, Base.int) Fieldslib.Field.t -> t -> Base.int -> 'elem__) ->
  gapopen:((t, Base.int) Fieldslib.Field.t -> t -> Base.int -> 'elem__) ->
  qstart:((t, Base.int) Fieldslib.Field.t -> t -> Base.int -> 'elem__) ->
  qend:((t, Base.int) Fieldslib.Field.t -> t -> Base.int -> 'elem__) ->
  tstart:((t, Base.int) Fieldslib.Field.t -> t -> Base.int -> 'elem__) ->
  tend:((t, Base.int) Fieldslib.Field.t -> t -> Base.int -> 'elem__) ->
  evalue:((t, Base.float) Fieldslib.Field.t -> t -> Base.float -> 'elem__) ->
  bits:((t, Base.float) Fieldslib.Field.t -> t -> Base.float -> 'elem__) ->
  qlen:
    ((t, Base.int Base.option) Fieldslib.Field.t ->
      t ->
      Base.int Base.option ->
      'elem__) ->
  tlen:
    ((t, Base.int Base.option) Fieldslib.Field.t ->
      t ->
      Base.int Base.option ->
      'elem__) ->
  'elem__ Base.list

val map : 
  t ->
  query:((t, Base.string) Fieldslib.Field.t -> t -> Base.string -> Base.string) ->
  target:
    ((t, Base.string) Fieldslib.Field.t -> t -> Base.string -> Base.string) ->
  pident:((t, Base.float) Fieldslib.Field.t -> t -> Base.float -> Base.float) ->
  alnlen:((t, Base.int) Fieldslib.Field.t -> t -> Base.int -> Base.int) ->
  mismatch:((t, Base.int) Fieldslib.Field.t -> t -> Base.int -> Base.int) ->
  gapopen:((t, Base.int) Fieldslib.Field.t -> t -> Base.int -> Base.int) ->
  qstart:((t, Base.int) Fieldslib.Field.t -> t -> Base.int -> Base.int) ->
  qend:((t, Base.int) Fieldslib.Field.t -> t -> Base.int -> Base.int) ->
  tstart:((t, Base.int) Fieldslib.Field.t -> t -> Base.int -> Base.int) ->
  tend:((t, Base.int) Fieldslib.Field.t -> t -> Base.int -> Base.int) ->
  evalue:((t, Base.float) Fieldslib.Field.t -> t -> Base.float -> Base.float) ->
  bits:((t, Base.float) Fieldslib.Field.t -> t -> Base.float -> Base.float) ->
  qlen:
    ((t, Base.int Base.option) Fieldslib.Field.t ->
      t ->
      Base.int Base.option ->
      Base.int Base.option) ->
  tlen:
    ((t, Base.int Base.option) Fieldslib.Field.t ->
      t ->
      Base.int Base.option ->
      Base.int Base.option) ->
  t

val set_all_mutable_fields : t -> Base.unit

package bio_io