gsl

GSL - Bindings to the GNU Scientific Library
README

GSL-OCaml is an interface to the GSL
(GNU scientific library) for the OCaml-language.
The currently latest GSL-version known to be compatible is 2.0.

Requirements

The platform must not align doubles on double-word addresses, i.e. the C-macro
ARCH_ALIGN_DOUBLE must be undefined in the OCaml C-configuration header in
<caml/config.h>.

Configuring alternative BLAS-libraries

The underlying GSL-library depends on a C-implementation of the BLAS-library
(Basic Linear Algebra Subroutines). It comes with its own implementation,
gslcblas, which GSL will link with by default.

This implementation is usually considerably slower than alternatives like
OpenBLAS or ATLAS (Automatically Tuned Linear
Algebra Software)
or miscellaneous
platform-specific vendor implementations.

If you want GSL-OCaml to link with another BLAS-implementation by default, you
will need to set an environment variable before starting the build process (e.g.
before opam install):

$ export GSL_CBLAS_LIB=-lopenblas

Note that on Mac OS X GSL-OCaml requires the Apple-specific, highly optimized
vendor library vecLib, which is part of the Accelerate-framework, and will
automatically link with it. If you do not wish to use Accelerate you can
override it; for a Homebrew-installed OpenBlas in the usual place you then
need to

export GSL_CBLAS_LIB="-L/usr/local/opt/openblas/lib/ -lopenblas"

Documentation

Read the GSL manual to learn
more about the GNU Scientific Library, and also the
GSL-OCaml API.

Usage Hints

Vectors and Matrices

There are several data types for handling vectors and matrices.

  • Modules Gsl.Vector, Gsl.Vector.Single, Gsl.Vector_complex,
    Gsl.Vector_complex.Single, and the corresponding matrix modules use
    bigarrays with single or double precision and real or complex values.

  • Modules Gsl.Vector_flat, Gsl.Vector_complex_flat, and the corresponding
    matrix modules use a record wrapping a regular OCaml float array. This is
    the equivalent of the gsl_vector and gsl_matrix structs in GSL.

  • Module Gsl.Vectmat defines a sum type with polymorphic variants
    that regroups these two representations. For instance:

    Gsl.Vectmat.v_add (`V v1) (`VF v2)
    

    adds a vector in an OCaml array to a bigarray.

  • Modules Gsl.Blas Gsl.Blas_flat and Gsl.Blas_gen provide a (quite
    incomplete) interface to CBLAS for these types.

ERROR HANDLING

Errors in GSL functions are reported as exceptions:

Gsl.Error.Gsl_exn (errno, msg)

You have to call Gsl.Error.init () to initialize error reporting. Otherwise,
the default GSL error handler is used and aborts the program, leaving a core
dump (not so helpful with OCaml).

If a callback (for minimizers, solvers, etc.) raises an exception, GSL-OCaml
either returns GSL_FAILURE or NaN to GSL depending on the type of callback.
In either case the original OCaml exception is not propagated. The GSL function
will either return normally (but probably with values containing NaNs
somewhere) or raise a Gsl_exn exception.

Contact Information and Contributing

Please submit bugs reports, feature requests, contributions and similar to
the GitHub issue tracker.

Up-to-date information is available at: https://mmottl.github.io/gsl-ocaml

Install
Published
12 Jun 2018
Sources
gsl-1.22.0.tbz
md5=1baff3a8d0fab6ab080b9063ef3a7ac4
Dependencies
jbuilder
>= "1.0+beta10"
stdio
build
base
build
ocaml
>= "4.05"
Reverse Dependencies