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mpi 1.03
Error log
The package failed to build. The error log from opam follows.
You are using opam 2.1+, where external dependency handling has been integrated: consider calling opam directly, the 'depext' plugin interface is provided for backwards compatibility only
# Detecting depexts using vars: arch=x86_64, os=linux, os-distribution=debian, os-family=debian
# The following system packages are needed:
mpi-default-dev
pkg-config
[NOTE] Package ocamlfind is already installed (current version is 1.9.5).
The following actions will be performed:
- install conf-pkg-config 2
- install conf-mpi 1
- install mpi 1.03
===== 3 to install =====
The following system packages will first need to be installed:
mpi-default-dev pkg-config
<><> Handling external dependencies <><><><><><><><><><><><><><><><><><><><><><>
Let opam run your package manager to install the required system packages?
(answer 'n' for other options) [Y/n] y
+ /usr/bin/sudo "apt-get" "install" "-qq" "-yy" "mpi-default-dev" "pkg-config"
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- No schema files found: doing nothing.
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- Setting up libglib2.0-data (2.66.8-1) ...
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- Setting up libhwloc15:amd64 (2.4.1+dfsg-1) ...
- Setting up libevent-core-2.1-7:amd64 (2.1.12-stable-1) ...
- Setting up libevent-2.1-7:amd64 (2.1.12-stable-1) ...
- Setting up pkg-config (0.29.2-1) ...
- Setting up libltdl7:amd64 (2.4.6-15) ...
- Setting up libgfortran5:amd64 (10.2.1-6) ...
- Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2+deb11u2) ...
- Setting up libnuma1:amd64 (2.0.12-1+b1) ...
- Setting up ocl-icd-libopencl1:amd64 (2.2.14-2) ...
- Setting up libnl-3-200:amd64 (3.4.0-1+b1) ...
- Setting up libpsm2-2 (11.2.185-1) ...
- Setting up openmpi-common (4.1.0-10) ...
- Setting up libgfortran-10-dev:amd64 (10.2.1-6) ...
- Setting up libpsm-infinipath1 (3.3+20.604758e7-6.1) ...
- update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode
- Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ...
- Setting up libxml2:amd64 (2.9.10+dfsg-6.7+deb11u3) ...
- Setting up libevent-pthreads-2.1-7:amd64 (2.1.12-stable-1) ...
- Setting up libevent-extra-2.1-7:amd64 (2.1.12-stable-1) ...
- Setting up libtool (2.4.6-15) ...
- Setting up libevent-openssl-2.1-7:amd64 (2.1.12-stable-1) ...
- Setting up m4 (1.4.18-5) ...
- Setting up libhwloc-plugins:amd64 (2.4.1+dfsg-1) ...
- Setting up libnuma-dev:amd64 (2.0.12-1+b1) ...
- Setting up libnl-route-3-200:amd64 (3.4.0-1+b1) ...
- Setting up libjs-jquery-ui (1.12.1+dfsg-8+deb11u1) ...
- Setting up shared-mime-info (2.0-1) ...
- Setting up libevent-dev (2.1.12-stable-1) ...
- Setting up gfortran-10 (10.2.1-6) ...
- Setting up autoconf (2.69-14) ...
- Setting up libnl-3-dev:amd64 (3.4.0-1+b1) ...
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- Setting up gfortran (4:10.2.1-1) ...
- update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
- update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
- Setting up libnl-route-3-dev:amd64 (3.4.0-1+b1) ...
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- Setting up libhwloc-dev:amd64 (2.4.1+dfsg-1) ...
- Setting up libpmix-dev:amd64 (4.0.0-4.1) ...
- Setting up librdmacm1:amd64 (33.2-1) ...
- Setting up libucx0:amd64 (1.10.1~rc1+really.1.10.0-1) ...
- Setting up libcoarrays-dev:amd64 (2.9.2-3) ...
- Setting up libibverbs-dev:amd64 (33.2-1) ...
- Setting up libfabric1 (1.11.0-2) ...
- Setting up libopenmpi3:amd64 (4.1.0-10) ...
- Setting up libcaf-openmpi-3:amd64 (2.9.2-3) ...
- Setting up openmpi-bin (4.1.0-10) ...
- update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode
- update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode
- Setting up libcoarrays-openmpi-dev:amd64 (2.9.2-3) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/open-coarrays/openmpi/bin/caf to provide /usr/bin/caf.openmpi (caf-openmpi) in auto mode
- update-alternatives: using /usr/bin/caf.openmpi to provide /usr/bin/caf (caf) in auto mode
- Setting up libopenmpi-dev:amd64 (4.1.0-10) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode
- Setting up mpi-default-dev (1.13) ...
- Processing triggers for libc-bin (2.31-13+deb11u5) ...
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
Processing 3/9:
Processing 4/9: [conf-pkg-config: pkg-config]
-> retrieved mpi.1.03 (cached)
+ /usr/bin/pkg-config "--help" (CWD=/home/opam/.opam/4.14/.opam-switch/build/conf-pkg-config.2)
- Usage:
- pkg-config [OPTION?]
-
- Help Options:
- -h, --help Show help options
-
- Application Options:
- --version output version of pkg-config
- --modversion output version for package
- --atleast-pkgconfig-version=VERSION require given version of pkg-config
- --libs output all linker flags
- --static output linker flags for static linking
- --short-errors print short errors
- --libs-only-l output -l flags
- --libs-only-other output other libs (e.g. -pthread)
- --libs-only-L output -L flags
- --cflags output all pre-processor and compiler flags
- --cflags-only-I output -I flags
- --cflags-only-other output cflags not covered by the cflags-only-I option
- --variable=NAME get the value of variable named NAME
- --define-variable=NAME=VALUE set variable NAME to VALUE
- --exists return 0 if the module(s) exist
- --print-variables output list of variables defined by the module
- --uninstalled return 0 if the uninstalled version of one or more module(s) or their dependencies will be used
- --atleast-version=VERSION return 0 if the module is at least version VERSION
- --exact-version=VERSION return 0 if the module is at exactly version VERSION
- --max-version=VERSION return 0 if the module is at no newer than version VERSION
- --list-all list all known packages
- --debug show verbose debug information
- --print-errors show verbose information about missing or conflicting packages (default unless --exists or --atleast/exact/max-version given on the command line)
- --silence-errors be silent about errors (default when --exists or --atleast/exact/max-version given on the command line)
- --errors-to-stdout print errors from --print-errors to stdout not stderr
- --print-provides print which packages the package provides
- --print-requires print which packages the package requires
- --print-requires-private print which packages the package requires for static linking
- --validate validate a package's .pc file
- --define-prefix try to override the value of prefix for each .pc file found with a guesstimated value based on the location of the .pc file
- --dont-define-prefix don't try to override the value of prefix for each .pc file found with a guesstimated value based on the location of the .pc file
- --prefix-variable=PREFIX set the name of the variable that pkg-config automatically sets
-
-> compiled conf-pkg-config.2
Processing 5/9: [conf-pkg-config: mkdir]
+ /bin/mkdir "-p" "/home/opam/.opam/4.14/lib/pkgconfig" (CWD=/home/opam/.opam/4.14/.opam-switch/build/conf-pkg-config.2)
-> installed conf-pkg-config.2
Processing 6/9: [conf-mpi: sh configure]
+ /bin/sh "configure" "linux" (CWD=/home/opam/.opam/4.14/.opam-switch/build/conf-mpi.1)
-> compiled conf-mpi.1
-> installed conf-mpi.1
[mpi: patch] applying post103.patch
Processing 8/9: [mpi: patch]
Processing 8/9: [mpi: make all]
+ /usr/bin/make "all" "opt" "MPIINCDIR=/usr/lib/x86_64-linux-gnu/openmpi/include" "MPILIBDIR=/usr/lib/x86_64-linux-gnu/openmpi/lib/lib" "MPICC=/usr/lib/x86_64-linux-gnu/openmpi/lib/bin/mpicc" "MPIRUN=/usr/lib/x86_64-linux-gnu/openmpi/lib/bin/mpirun" (CWD=/home/opam/.opam/4.14/.opam-switch/build/mpi.1.03)
- cc -I`ocamlc -where` -I/usr/lib/x86_64-linux-gnu/openmpi/include -O2 -g -Wall -c -o init.o init.c
- init.c: In function 'caml_mpi_error_handler':
- init.c:37:13: warning: "copy_string" is deprecated: use "caml_copy_string" instead
- 37 | msg = copy_string(errmsg);
- | ^~~~~~~~~~~~~~~~
- init.c:39:18: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers]
- 39 | caml_mpi_exn = caml_named_value("Mpi.Error");
- | ^
- init.c:41:13: warning: "invalid_argument" is deprecated: use "caml_invalid_argument" instead
- 41 | invalid_argument("Exception MPI.Error not initialized");
- | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- init.c:43:13: warning: "raise_with_arg" is deprecated: use "caml_raise_with_arg" instead
- 43 | raise_with_arg(*caml_mpi_exn, msg);
- | ^~~~~~~~~~~~~~~~~~~~~~~~~
- init.c: In function 'caml_mpi_init':
- init.c:55:13: warning: "stat_alloc" is deprecated: use "caml_stat_alloc" instead
- 55 | argv = stat_alloc((argc + 1) * sizeof(char *));
- | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- init.c:56:38: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers]
- 56 | for (i = 0; i < argc; i++) argv[i] = String_val(Field(arguments, i));
- | ^
- init.c:62:5: error: 'MPI_Handler_function' undeclared (first use in this function); did you mean 'MPI_User_function'?
- 62 | (MPI_Handler_function *)caml_mpi_error_handler, &hdlr);
- | ^~~~~~~~~~~~~~~~~~~~
- | MPI_User_function
- init.c:62:5: note: each undeclared identifier is reported only once for each function it appears in
- init.c:62:27: error: expected expression before ')' token
- 62 | (MPI_Handler_function *)caml_mpi_error_handler, &hdlr);
- | ^
- init.c:61:3: error: too few arguments to function 'MPI_Comm_create_errhandler'
- 61 | MPI_Comm_create_errhandler(
- | ^~~~~~~~~~~~~~~~~~~~~~~~~~
- In file included from init.c:18:
- /usr/lib/x86_64-linux-gnu/openmpi/include/mpi.h:1377:20: note: declared here
- 1377 | OMPI_DECLSPEC int MPI_Comm_create_errhandler(MPI_Comm_errhandler_function *function,
- | ^~~~~~~~~~~~~~~~~~~~~~~~~~
- init.c: In function 'caml_mpi_wtime':
- init.c:79:13: warning: "copy_double" is deprecated: use "caml_copy_double" instead
- 79 | return copy_double(MPI_Wtime());
- | ^~~~~~~~~~~~~~~~~~~~~~
- At top level:
- init.c:30:13: warning: 'caml_mpi_error_handler' defined but not used [-Wunused-function]
- 30 | static void caml_mpi_error_handler(MPI_Comm * comm, int * errcode, ...)
- | ^~~~~~~~~~~~~~~~~~~~~~
- make: *** [<builtin>: init.o] Error 1
[ERROR] The compilation of mpi.1.03 failed at "make all opt MPIINCDIR=/usr/lib/x86_64-linux-gnu/openmpi/include MPILIBDIR=/usr/lib/x86_64-linux-gnu/openmpi/lib/lib MPICC=/usr/lib/x86_64-linux-gnu/openmpi/lib/bin/mpicc MPIRUN=/usr/lib/x86_64-linux-gnu/openmpi/lib/bin/mpirun".
#=== ERROR while compiling mpi.1.03 ===========================================#
# context 2.1.3 | linux/x86_64 | ocaml-base-compiler.4.14.0 | file:///src
# path ~/.opam/4.14/.opam-switch/build/mpi.1.03
# command /usr/bin/make all opt MPIINCDIR=/usr/lib/x86_64-linux-gnu/openmpi/include MPILIBDIR=/usr/lib/x86_64-linux-gnu/openmpi/lib/lib MPICC=/usr/lib/x86_64-linux-gnu/openmpi/lib/bin/mpicc MPIRUN=/usr/lib/x86_64-linux-gnu/openmpi/lib/bin/mpirun
# exit-code 2
# env-file ~/.opam/log/mpi-261-08638a.env
# output-file ~/.opam/log/mpi-261-08638a.out
### output ###
# cc -I`ocamlc -where` -I/usr/lib/x86_64-linux-gnu/openmpi/include -O2 -g -Wall -c -o init.o init.c
# init.c: In function 'caml_mpi_error_handler':
# init.c:37:13: warning: "copy_string" is deprecated: use "caml_copy_string" instead
# 37 | msg = copy_string(errmsg);
# | ^~~~~~~~~~~~~~~~
# init.c:39:18: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers]
# 39 | caml_mpi_exn = caml_named_value("Mpi.Error");
# | ^
# init.c:41:13: warning: "invalid_argument" is deprecated: use "caml_invalid_argument" instead
# 41 | invalid_argument("Exception MPI.Error not initialized");
# | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
# init.c:43:13: warning: "raise_with_arg" is deprecated: use "caml_raise_with_arg" instead
# 43 | raise_with_arg(*caml_mpi_exn, msg);
# | ^~~~~~~~~~~~~~~~~~~~~~~~~
# init.c: In function 'caml_mpi_init':
# init.c:55:13: warning: "stat_alloc" is deprecated: use "caml_stat_alloc" instead
# 55 | argv = stat_alloc((argc + 1) * sizeof(char *));
# | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
# init.c:56:38: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers]
# 56 | for (i = 0; i < argc; i++) argv[i] = String_val(Field(arguments, i));
# | ^
# init.c:62:5: error: 'MPI_Handler_function' undeclared (first use in this function); did you mean 'MPI_User_function'?
# 62 | (MPI_Handler_function *)caml_mpi_error_handler, &hdlr);
# | ^~~~~~~~~~~~~~~~~~~~
# | MPI_User_function
# init.c:62:5: note: each undeclared identifier is reported only once for each function it appears in
# init.c:62:27: error: expected expression before ')' token
# 62 | (MPI_Handler_function *)caml_mpi_error_handler, &hdlr);
# | ^
# init.c:61:3: error: too few arguments to function 'MPI_Comm_create_errhandler'
# 61 | MPI_Comm_create_errhandler(
# | ^~~~~~~~~~~~~~~~~~~~~~~~~~
# In file included from init.c:18:
# /usr/lib/x86_64-linux-gnu/openmpi/include/mpi.h:1377:20: note: declared here
# 1377 | OMPI_DECLSPEC int MPI_Comm_create_errhandler(MPI_Comm_errhandler_function *function,
# | ^~~~~~~~~~~~~~~~~~~~~~~~~~
# init.c: In function 'caml_mpi_wtime':
# init.c:79:13: warning: "copy_double" is deprecated: use "caml_copy_double" instead
# 79 | return copy_double(MPI_Wtime());
# | ^~~~~~~~~~~~~~~~~~~~~~
# At top level:
# init.c:30:13: warning: 'caml_mpi_error_handler' defined but not used [-Wunused-function]
# 30 | static void caml_mpi_error_handler(MPI_Comm * comm, int * errcode, ...)
# | ^~~~~~~~~~~~~~~~~~~~~~
# make: *** [<builtin>: init.o] Error 1
<><> Error report <><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><>
+- The following actions failed
| - build mpi 1.03
+-
+- The following changes have been performed
| - install conf-mpi 1
| - install conf-pkg-config 2
+-
# Run eval $(opam env) to update the current shell environment
The former state can be restored with:
/usr/bin/opam switch import "/home/opam/.opam/4.14/.opam-switch/backup/state-20221210192424.export"
'opam --cli=2.1 install mpi.1.03 conf-mpi.1 conf-pkg-config.2 ocamlfind.1.9.5 --verbose --yes --confirm-level=unsafe-yes' failed.