package bistro-bio

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val bowtie_build : ?packed:bool -> ?color:bool -> Formats.fasta Bistro.file -> [ `bowtie_index ] Bistro.directory
val bowtie : ?l:int -> ?e:int -> ?m:int -> ?fastq_format:Fastq.format -> ?n:int -> ?v:int -> ?maxins:int -> ?additional_samples:Fastq_sample.t list -> [ `bowtie_index ] Bistro.directory -> Fastq_sample.t -> Formats.sam Bistro.file
val qual_option : Fastq.format -> string
val fastq_args : [ `V1 | `V2 ] -> Fastq_sample.t list -> Bistro.Shell_dsl.template
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