package bistro-bio

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val img : Bistro.container_image list
val trinity : ?mem:int -> ?threads:int -> ?no_normalize_reads:bool -> ?run_as_paired:bool -> ?min_kmer_cov:int -> ?ss_lib_type:[ `R | `F | `RF | `FR ] -> Fastq_sample.t list -> Formats.fasta Bistro.file
val prepare_fastq : int -> Formats.fastq Bistro.file -> Formats.fastq Bistro.file
val insilico_read_normalization : ?mem:int -> ?pairs_together:bool -> ?parallel_stats:bool -> max_cov:int -> Formats.fastq Bistro.file SE_or_PE.t -> Formats.fastq Bistro.file SE_or_PE.t
val get_Trinity_gene_to_trans_map : Formats.fasta Bistro.file -> Bistro.text Bistro.file
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