package bistro-bio

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val tophat1 : ?color:bool -> [ `bowtie_index ] Bistro.directory -> Formats.fastq Bistro.file list SE_or_PE.t -> [ `tophat ] Bistro.directory
val tophat2 : [ `bowtie2_index ] Bistro.directory -> Formats.fastq Bistro.file list SE_or_PE.t -> [ `tophat ] Bistro.directory
val accepted_hits : [ `tophat ] Bistro.directory -> Formats.bam Bistro.file
val junctions : [ `tophat ] Bistro.directory -> Formats.bed6 Bistro.file
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