package bistro-bio

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class type index = object ... end
class type abundance_table = object ... end
val img : Bistro.container_image list
val quant : ?bias:bool -> ?bootstrap_samples:int -> ?fr_stranded:bool -> ?rf_stranded:bool -> ?threads:int -> ?fragment_length:float -> ?sd:float -> index Bistro.file -> fq1: [ `fq of Formats.fastq Bistro.file | `fq_gz of Formats.fastq Bistro.gz Bistro.file ] -> ?fq2: [ `fq of Formats.fastq Bistro.file | `fq_gz of Formats.fastq Bistro.gz Bistro.file ] -> unit -> [ `kallisto ] Bistro.directory
val abundance : [ `kallisto ] Bistro.directory -> abundance_table Bistro.file
val merge_eff_counts : sample_ids:string list -> kallisto_outputs:abundance_table Bistro.file list -> Bistro.tsv Bistro.file
val merge_tpms : sample_ids:string list -> kallisto_outputs:abundance_table Bistro.file list -> Bistro.tsv Bistro.file
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