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  • bistro

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ON THIS PAGE
  • Libraries
    • bistro
    • bistro.bioinfo
    • bistro.engine
    • bistro.tdag
    • bistro.ppx
    • bistro.utils
package bistro
  • bistro
    • Bistro
      • Command
      • EDSL
      • Path
      • Std
        • Unix_tools
        • binary_file
        • bz2
        • directory
        • file
        • gz
        • html
        • marshalled_value
        • pdf
        • png
        • sexp_value
        • svg
        • tar
        • text_file
        • tsv
        • zip
      • Template
      • U
      • Workflow
      • directory
  • bistro.bioinfo
    • Bistro_bioinfo
      • Bed
      • Bedtools
        • Cmd
      • Bowtie
      • Bowtie2
      • ChIPQC
      • Deeptools
        • compressed_numpy_array
        • deeptools_matrix
      • Defs
        • bam
        • bed3
        • bed4
        • bed5
        • bed6
        • fasta
        • fastq
        • gff
        • gff2
        • gff3
        • sam
        • sra
      • Deseq2
        • table
      • Ensembl
      • FastQC
      • Fastq
      • Fastq_screen
      • Htseq
        • count_tsv
      • Jaspar
      • Macs
        • narrow_peaks
        • peak_summits
        • peaks_xls
      • Macs2
        • broad_peaks
        • narrow_peaks
        • peak_summits
        • peaks_xls
      • Meme_suite
      • Misc
        • Infix
      • Prokka
      • Samtools
      • Spades
      • Sra
      • Sra_toolkit
      • Srst2
      • Std
        • bed3
        • bed4
        • bed5
        • bed6
        • fasta
        • fastq
        • gff
        • sam
        • sra
      • Tophat
      • Ucsc_gb
        • Lift_over
          • chain_file
        • bedGraph
        • bigBed
        • bigWig
        • chrom_sizes
        • twobit
        • wig
  • bistro.engine
    • Bistro_engine
      • Allocator
      • Db
      • Lwt_utils
      • Scheduler
        • DAG
          • logger
        • logger
      • Task
  • bistro.ppx
    • Ppx_bistro
      • B
        • Located
      • payload_rewriter
  • bistro.tdag
    • Bistro_tdag
      • Tdag
        • Make
          • D
            • Allocator
            • Task
            • Thread
          • logger
      • Tdag_sig
        • Domain
          • Allocator
          • Task
          • Thread
        • S
          • logger
  • bistro.utils
    • Bistro_utils
      • Console_logger
      • Dot_output
      • Html_logger
      • Logger
      • Repo
      • Term
        • Syntax
          • Let_syntax
Legend:
Library
Module
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Class type

bistro 0.4.0

Libraries

This package provides the following libraries (via dune):

bistro

Documentation: Bistro

Dependencies: ppx_sexp_conv.runtime-lib, core

bistro.bioinfo

Documentation:

  • Bistro_bioinfo.Bed
  • Bistro_bioinfo.Bedtools
  • Bistro_bioinfo.Bowtie
  • Bistro_bioinfo.Bowtie2
  • Bistro_bioinfo.ChIPQC
  • Bistro_bioinfo.Deeptools
  • Bistro_bioinfo.Defs
  • Bistro_bioinfo.Deseq2
  • Bistro_bioinfo.Ensembl
  • Bistro_bioinfo.FastQC
  • Bistro_bioinfo.Fastq
  • Bistro_bioinfo.Fastq_screen
  • Bistro_bioinfo.Htseq
  • Bistro_bioinfo.Jaspar
  • Bistro_bioinfo.Macs
  • Bistro_bioinfo.Macs2
  • Bistro_bioinfo.Meme_suite
  • Bistro_bioinfo.Misc
  • Bistro_bioinfo.Prokka
  • Bistro_bioinfo.Samtools
  • Bistro_bioinfo.Spades
  • Bistro_bioinfo.Sra
  • Bistro_bioinfo.Sra_toolkit
  • Bistro_bioinfo.Srst2
  • Bistro_bioinfo.Std
  • Bistro_bioinfo.Tophat
  • Bistro_bioinfo.Ucsc_gb

Dependencies: bistro, core

bistro.engine

Documentation:

  • Bistro_engine.Allocator
  • Bistro_engine.Db A database to cache workflow result and execution traces
  • Bistro_engine.Lwt_utils
  • Bistro_engine.Scheduler
  • Bistro_engine.Task

Dependencies: bistro, bistro.tdag, core, lwt.unix, rresult

bistro.tdag

Documentation:

  • Bistro_tdag.Tdag
  • Bistro_tdag.Tdag_sig

Dependencies: core_kernel, ocamlgraph, rresult

bistro.ppx

Documentation: Ppx_bistro

Dependencies: ppxlib

bistro.utils

Documentation:

  • Bistro_utils.Console_logger
  • Bistro_utils.Dot_output
  • Bistro_utils.Html_logger
  • Bistro_utils.Logger
  • Bistro_utils.Repo
  • Bistro_utils.Term

Dependencies: bistro.engine, tyxml

ON THIS PAGE
  • Libraries
    • bistro
    • bistro.bioinfo
    • bistro.engine
    • bistro.tdag
    • bistro.ppx
    • bistro.utils

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